Variant report

Variant	rs9847681
Chromosome Location	chr3:143704516-143704517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143689459..143694662-chr3:143702114..143706390,7	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10513239	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs11720435	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11917772	0.82[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs13317365	0.85[AMR][1000 genomes]
rs13320111	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs1604886	0.81[EUR][1000 genomes]
rs2370173	0.81[EUR][1000 genomes]
rs28627639	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56880774	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6776760	0.81[EUR][1000 genomes]
rs73000690	0.85[AMR][1000 genomes]
rs73002695	0.92[EUR][1000 genomes]
rs73002698	0.92[EUR][1000 genomes]
rs73872672	0.85[AMR][1000 genomes]
rs7627966	0.92[EUR][1000 genomes]
rs7637012	0.81[EUR][1000 genomes]
rs964572	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9823162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834740	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9835993	1.00[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9849618	0.85[AMR][1000 genomes]
rs9860540	0.81[EUR][1000 genomes]
rs9861563	0.94[EUR][1000 genomes]
rs9866992	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9870939	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9874033	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876107	0.85[AMR][1000 genomes]
rs9879081	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143692600-143707800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:143692800-143714200	Weak transcription	Small Intestine	intestine
3	chr3:143693400-143706800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:143693400-143708400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:143693400-143708400	Weak transcription	Psoas Muscle	Psoas
6	chr3:143693400-143713800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:143693600-143711600	Weak transcription	Left Ventricle	heart
8	chr3:143694000-143708000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:143694200-143705600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:143694400-143708400	Weak transcription	Fetal Intestine Small	intestine
11	chr3:143694400-143718800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:143694400-143719400	Weak transcription	Hela-S3	cervix
13	chr3:143694800-143707200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:143695600-143710200	Weak transcription	Fetal Brain Male	brain
15	chr3:143695600-143716800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:143696400-143711600	Weak transcription	Fetal Brain Female	brain
17	chr3:143696400-143711800	Weak transcription	Fetal Intestine Large	intestine
18	chr3:143696800-143706600	Weak transcription	Ovary	ovary
19	chr3:143697000-143708000	Weak transcription	HUVEC	blood vessel
20	chr3:143697000-143708400	Weak transcription	K562	blood
21	chr3:143697000-143713400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:143697000-143722800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:143697000-143729200	Weak transcription	Aorta	Aorta
24	chr3:143697200-143708400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:143697200-143708400	Weak transcription	HMEC	breast
26	chr3:143697200-143708400	Weak transcription	NHEK	skin
27	chr3:143697200-143710200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:143697200-143712000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:143697200-143723000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:143697200-143727800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:143697400-143708400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:143697800-143707800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:143697800-143707800	Weak transcription	Dnd41	blood
34	chr3:143697800-143708000	Weak transcription	Liver	Liver
35	chr3:143698000-143711000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:143698200-143708400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:143698400-143708400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:143698400-143708400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:143698400-143721200	Weak transcription	Fetal Kidney	kidney
40	chr3:143698600-143707800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr3:143698800-143706200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:143698800-143708400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:143699000-143707800	Weak transcription	Fetal Lung	lung
44	chr3:143699000-143708400	Weak transcription	NHLF	lung
45	chr3:143699000-143717000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:143699200-143737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:143699400-143706400	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr3:143699400-143712200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:143699400-143714000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:143700400-143708400	Weak transcription	H1 Cell Line	embryonic stem cell

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