Variant report
| Variant | rs7637012 |
|---|---|
| Chromosome Location | chr3:143637086-143637087 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11720435 | 0.83[ASN][1000 genomes] |
| rs11917772 | 0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13317365 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13320111 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1604886 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2370173 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28627639 | 0.81[EUR][1000 genomes] |
| rs56880774 | 0.81[EUR][1000 genomes] |
| rs6776760 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73000690 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73872672 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs964572 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9823162 | 0.81[EUR][1000 genomes] |
| rs9834740 | 0.81[EUR][1000 genomes] |
| rs9835993 | 0.81[EUR][1000 genomes] |
| rs9847681 | 0.81[EUR][1000 genomes] |
| rs9849618 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9860540 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9866992 | 0.98[EUR][1000 genomes] |
| rs9870939 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9874033 | 0.81[EUR][1000 genomes] |
| rs9876107 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9879081 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:143629800-143640400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
