Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11917772	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13317365	0.92[EUR][1000 genomes]
rs13320111	0.81[EUR][1000 genomes]
rs2370173	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627639	0.81[EUR][1000 genomes]
rs56880774	0.81[EUR][1000 genomes]
rs6776760	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73000690	0.88[EUR][1000 genomes]
rs73872672	0.88[EUR][1000 genomes]
rs7637012	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs964572	1.00[EUR][1000 genomes]
rs9823162	0.81[EUR][1000 genomes]
rs9834740	0.81[EUR][1000 genomes]
rs9835993	0.81[EUR][1000 genomes]
rs9847681	0.81[EUR][1000 genomes]
rs9849618	0.92[EUR][1000 genomes]
rs9860540	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866992	0.98[EUR][1000 genomes]
rs9870939	1.00[EUR][1000 genomes]
rs9874033	0.81[EUR][1000 genomes]
rs9876107	0.88[EUR][1000 genomes]
rs9879081	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143629800-143640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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