Variant report

Variant	rs11707556
Chromosome Location	chr3:133538015-133538016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:133537475..133538477-chr3:133645841..133647068,5	MCF-7	breast:
2	chr3:133536393..133538407-chr3:133540406..133542123,3	K562	blood:
3	chr3:133382180..133383177-chr3:133537390..133538324,3	MCF-7	breast:
4	chr3:133537474..133538448-chr3:133551085..133551976,2	MCF-7	breast:
5	chr3:133536504..133538338-chr3:133544056..133545564,2	MCF-7	breast:
6	chr3:133536905..133538476-chr3:133539305..133541254,2	MCF-7	breast:
7	chr3:133533757..133536015-chr3:133537201..133540775,3	MCF-7	breast:
8	chr3:133378150..133381955-chr3:133535581..133539638,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163781	Chromatin interaction
ENSG00000242337	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10512913	0.85[CHB][hapmap]
rs1800277	1.00[JPT][hapmap]
rs6785596	1.00[JPT][hapmap]
rs6796795	1.00[JPT][hapmap]
rs8177313	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11707556	DBR1	cis	parietal	SCAN
rs11707556	TOPBP1	cis	parietal	SCAN
rs11707556	SRPRB	Cis_1M	lymphoblastoid	RTeQTL
rs11707556	SRPRB	cis	parietal	SCAN
rs11707556	PRR23C	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133525400-133539000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:133525600-133538400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:133525600-133539000	Weak transcription	Gastric	stomach
4	chr3:133525600-133539200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:133525600-133541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:133525800-133538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:133525800-133538800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:133525800-133538800	Weak transcription	Stomach Mucosa	stomach
9	chr3:133525800-133541000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:133526200-133540600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:133526200-133543400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr3:133526400-133540200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:133526400-133543800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:133526400-133544000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr3:133526400-133544000	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr3:133526600-133539800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:133526600-133539800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:133526600-133543400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:133526600-133544800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr3:133526600-133544800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:133526800-133538400	Weak transcription	Small Intestine	intestine
22	chr3:133526800-133542000	Strong transcription	NH-A	brain
23	chr3:133526800-133544000	Strong transcription	Liver	Liver
24	chr3:133526800-133544800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr3:133527000-133541400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:133527000-133545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:133527200-133545000	Strong transcription	Dnd41	blood
28	chr3:133528000-133543400	Strong transcription	Fetal Thymus	thymus
29	chr3:133529200-133545200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:133529400-133539000	Weak transcription	Fetal Brain Male	brain
31	chr3:133529400-133540600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:133530200-133538400	Weak transcription	Thymus	Thymus
33	chr3:133530400-133538400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:133531800-133540200	Strong transcription	Osteobl	bone
35	chr3:133532000-133540400	Weak transcription	Fetal Heart	heart
36	chr3:133532200-133541800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:133532400-133540400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:133533000-133540200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:133533200-133539600	Weak transcription	Esophagus	oesophagus
40	chr3:133533600-133540400	Strong transcription	Brain Hippocampus Middle	brain
41	chr3:133533600-133543000	Strong transcription	Fetal Lung	lung
42	chr3:133533600-133543400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr3:133533600-133543600	Strong transcription	Fetal Intestine Large	intestine
44	chr3:133533600-133545000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:133533600-133546200	Strong transcription	Stomach Smooth Muscle	stomach
46	chr3:133533800-133538400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:133533800-133538400	Weak transcription	Fetal Intestine Small	intestine
48	chr3:133533800-133543200	Strong transcription	K562	blood
49	chr3:133534000-133538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:133534000-133538400	Weak transcription	H9 Cell Line	embryonic stem cell

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