Variant report

Variant	rs8177313
Chromosome Location	chr3:133464102-133464103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11707556	1.00[JPT][hapmap]
rs12638146	0.92[ASN][1000 genomes]
rs1800276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806081	0.82[CHB][hapmap]
rs7620678	0.82[CHB][hapmap]
rs8177220	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs8177321	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133460400-133464600	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr3:133460800-133464600	Enhancers	Brain Angular Gyrus	brain
3	chr3:133461600-133464400	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:133461600-133464400	Enhancers	Brain Substantia Nigra	brain
5	chr3:133461800-133464400	Enhancers	Brain Hippocampus Middle	brain
6	chr3:133461800-133464600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:133462000-133464600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:133462200-133464400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:133462200-133464400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:133462400-133464400	Enhancers	Brain Anterior Caudate	brain
11	chr3:133462800-133464400	Weak transcription	Pancreas	Pancrea
12	chr3:133463400-133464200	Enhancers	HepG2	liver
13	chr3:133463400-133465200	Flanking Active TSS	Liver	Liver
14	chr3:133463600-133464400	Enhancers	K562	blood
15	chr3:133463600-133465200	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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