Variant report

Variant	rs11707603
Chromosome Location	chr3:133150938-133150939
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10935062	0.85[EUR][1000 genomes]
rs10935063	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13073286	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1871356	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1871357	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2086254	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2293601	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2370243	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2370244	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28615290	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2887689	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2887690	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4133679	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4286432	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4635703	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6781120	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6804296	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7427918	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9820011	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9827245	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9853488	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9858482	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9858615	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9858947	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9877839	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv522281	chr3:133137434-133167363	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv819448	chr3:133145453-133165585	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133142800-133151800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:133142800-133154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:133147800-133151000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:133147800-133152400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:133147800-133154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:133148400-133156400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:133148400-133159200	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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