Variant report

Variant	rs2293601
Chromosome Location	chr3:133145280-133145281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133103700..133105206-chr3:133145260..133147537,2	MCF-7	breast:
2	chr3:133143999..133146404-chr3:133171252..133173491,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10935062	0.94[EUR][1000 genomes]
rs10935063	0.94[EUR][1000 genomes]
rs11707603	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13073286	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13096997	0.86[ASN][1000 genomes]
rs1871356	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1871357	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2086254	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2370243	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2370244	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28615290	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2887689	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2887690	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4133679	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4286432	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4408871	0.91[ASN][1000 genomes]
rs4635703	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55751745	0.85[EUR][1000 genomes]
rs62280909	1.00[ASN][1000 genomes]
rs6781120	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6804296	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7427918	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9820011	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9827245	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9846931	1.00[ASN][1000 genomes]
rs9853365	1.00[ASN][1000 genomes]
rs9853488	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9858482	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9858615	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9858947	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9877839	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv522281	chr3:133137434-133167363	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1007047	chr3:133137664-133181388	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1006289	chr3:133137664-133186808	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133142800-133147000	Weak transcription	Placenta	Placenta
2	chr3:133142800-133147200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:133142800-133147400	Weak transcription	Esophagus	oesophagus
4	chr3:133142800-133151800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:133142800-133154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:133143000-133145400	Weak transcription	HSMMtube	muscle
7	chr3:133143000-133145800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:133143400-133145600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:133144800-133147200	Weak transcription	Liver	Liver
10	chr3:133145000-133146000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:133145000-133146400	Enhancers	Right Atrium	heart
12	chr3:133145000-133146600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:133145200-133146200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:133145200-133146400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links