Variant report

Variant	rs117084180
Chromosome Location	chr15:82553667-82553668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr15:82552495-82555445	K562	blood:	n/a	chr15:82553933-82553944 chr15:82552568-82552580 chr15:82553147-82553154 chr15:82552847-82552860 chr15:82552859-82552873 chr15:82553147-82553155 chr15:82553147-82553155

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82511968..82514595-chr15:82553137..82554662,2	K562	blood:
2	chr15:82540150..82542827-chr15:82551322..82553905,2	K562	blood:

Variant related genes	Relation type
FAM154B	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1041040	chr15:82465124-82606410	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1801737	chr15:82468455-82589044	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv570246	chr15:82485707-82581264	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1041506	chr15:82496164-82581427	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv1798145	chr15:82506790-82581264	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv904440	chr15:82524544-82591082	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv904441	chr15:82532963-82580736	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv904442	chr15:82540174-82571046	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1054025	chr15:82540486-83058214	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
15	nsv904443	chr15:82553472-82571780	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82508200-82553800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:82510800-82554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:82511800-82554200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:82520000-82554200	Weak transcription	Pancreas	Pancrea
5	chr15:82520200-82554400	Weak transcription	Esophagus	oesophagus
6	chr15:82532000-82554000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:82533400-82553800	Weak transcription	Aorta	Aorta
8	chr15:82533400-82553800	Weak transcription	Brain Substantia Nigra	brain
9	chr15:82533400-82554000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:82533400-82554200	Weak transcription	Colonic Mucosa	Colon
11	chr15:82533800-82554200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:82537000-82554200	Weak transcription	Ovary	ovary
13	chr15:82538200-82554400	Weak transcription	Lung	lung
14	chr15:82541000-82554400	Weak transcription	Spleen	Spleen
15	chr15:82544800-82554000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:82545600-82554000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:82545800-82553800	Weak transcription	Fetal Stomach	stomach
18	chr15:82545800-82554200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:82547000-82554400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:82549800-82553800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:82551200-82553800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:82551200-82554000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:82551200-82554200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:82551400-82553800	Weak transcription	Adipose Nuclei	Adipose
25	chr15:82551400-82553800	Weak transcription	Liver	Liver
26	chr15:82551400-82554000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:82551400-82554000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:82551400-82554200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:82551400-82554200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:82551400-82554200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:82551400-82554200	Weak transcription	Placenta	Placenta
32	chr15:82551600-82553800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:82551600-82554200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:82551600-82554200	Weak transcription	Brain Anterior Caudate	brain
35	chr15:82551600-82554200	Weak transcription	Fetal Muscle Leg	muscle
36	chr15:82551800-82554000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:82552200-82553800	Enhancers	Fetal Brain Male	brain
38	chr15:82552400-82556800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:82552600-82554200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:82552800-82553800	Enhancers	Primary T cells from cord blood	blood
41	chr15:82552800-82553800	Enhancers	Fetal Intestine Small	intestine
42	chr15:82552800-82554000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:82552800-82554000	Enhancers	HepG2	liver
44	chr15:82552800-82554200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr15:82552800-82554400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr15:82552800-82554400	Enhancers	Fetal Heart	heart
47	chr15:82553000-82553800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:82553000-82553800	Enhancers	Left Ventricle	heart
49	chr15:82553000-82553800	Enhancers	Small Intestine	intestine
50	chr15:82553000-82553800	Enhancers	HUVEC	blood vessel

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