Variant report

Variant	rs11708440
Chromosome Location	chr3:142947872-142947873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142945884..142947891-chr3:142949125..142952561,4	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs11715203	0.84[ASN][1000 genomes]
rs1550548	0.85[ASN][1000 genomes]
rs1667712	0.81[ASN][1000 genomes]
rs169808	0.85[ASN][1000 genomes]
rs17470719	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186077	0.84[ASN][1000 genomes]
rs2165519	0.87[ASN][1000 genomes]
rs2165520	0.84[ASN][1000 genomes]
rs2165521	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2583458	0.83[ASN][1000 genomes]
rs2596616	0.82[ASN][1000 genomes]
rs294465	0.84[ASN][1000 genomes]
rs294469	0.85[ASN][1000 genomes]
rs294471	0.84[ASN][1000 genomes]
rs294472	0.85[ASN][1000 genomes]
rs294473	0.85[ASN][1000 genomes]
rs4371486	0.85[ASN][1000 genomes]
rs4839588	0.84[ASN][1000 genomes]
rs4839591	0.84[ASN][1000 genomes]
rs4839616	0.85[ASN][1000 genomes]
rs4839617	0.85[ASN][1000 genomes]
rs4839618	0.85[ASN][1000 genomes]
rs4839619	0.84[ASN][1000 genomes]
rs4839621	0.85[ASN][1000 genomes]
rs4839629	0.84[ASN][1000 genomes]
rs4839637	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4839656	0.84[ASN][1000 genomes]
rs54520	0.84[ASN][1000 genomes]
rs57923975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62279674	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6414352	0.85[ASN][1000 genomes]
rs6440149	0.85[ASN][1000 genomes]
rs6440150	0.85[ASN][1000 genomes]
rs6440151	0.85[ASN][1000 genomes]
rs6440152	0.85[ASN][1000 genomes]
rs6440153	0.84[ASN][1000 genomes]
rs6440154	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6765181	0.84[ASN][1000 genomes]
rs67665960	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6772917	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6776634	0.84[ASN][1000 genomes]
rs6777882	0.84[ASN][1000 genomes]
rs6778330	0.84[ASN][1000 genomes]
rs6781821	0.83[ASN][1000 genomes]
rs6781909	0.85[ASN][1000 genomes]
rs6785002	0.84[ASN][1000 genomes]
rs6785085	0.82[ASN][1000 genomes]
rs6786129	0.85[ASN][1000 genomes]
rs6787156	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795908	0.84[ASN][1000 genomes]
rs6796353	0.84[ASN][1000 genomes]
rs6803862	0.85[ASN][1000 genomes]
rs6808316	0.87[ASN][1000 genomes]
rs7611317	0.83[ASN][1000 genomes]
rs7622977	0.82[ASN][1000 genomes]
rs7632649	0.85[ASN][1000 genomes]
rs7642629	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646566	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834906	0.84[ASN][1000 genomes]
rs834907	0.85[ASN][1000 genomes]
rs834908	0.85[ASN][1000 genomes]
rs834909	0.85[ASN][1000 genomes]
rs834910	0.85[ASN][1000 genomes]
rs9289656	0.84[ASN][1000 genomes]
rs9289657	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809153	0.83[ASN][1000 genomes]
rs9830629	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9831427	0.88[EUR][1000 genomes]
rs9847552	0.80[ASN][1000 genomes]
rs9874117	0.88[EUR][1000 genomes]
rs990738	0.84[ASN][1000 genomes]
rs991419	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142939400-142955000	Weak transcription	Primary T cells from cord blood	blood
2	chr3:142941600-142956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:142944000-142955200	Weak transcription	Fetal Lung	lung
4	chr3:142947200-142948000	Enhancers	Fetal Thymus	thymus
5	chr3:142947200-142948000	Enhancers	K562	blood
6	chr3:142947400-142948000	Enhancers	Dnd41	blood
7	chr3:142947600-142948200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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