Variant report

Variant	rs9874117
Chromosome Location	chr3:142954044-142954045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11708440	0.88[EUR][1000 genomes]
rs17470719	0.87[EUR][1000 genomes]
rs2165521	0.86[EUR][1000 genomes]
rs4371486	0.82[CEU][hapmap]
rs4839637	0.86[EUR][1000 genomes]
rs57923975	0.88[EUR][1000 genomes]
rs62279674	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6440154	0.86[EUR][1000 genomes]
rs67665960	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6772917	0.86[EUR][1000 genomes]
rs6787156	0.81[EUR][1000 genomes]
rs7642629	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7646566	0.88[EUR][1000 genomes]
rs9289657	0.83[EUR][1000 genomes]
rs9830629	0.86[EUR][1000 genomes]
rs9831427	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv34280	chr3:142887460-142962075	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv818171	chr3:142894411-142960273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1009573	chr3:142896048-142959777	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757014	chr3:142905661-142964373	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142939400-142955000	Weak transcription	Primary T cells from cord blood	blood
2	chr3:142941600-142956400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:142944000-142955200	Weak transcription	Fetal Lung	lung
4	chr3:142948000-142955200	Weak transcription	Fetal Thymus	thymus
5	chr3:142949800-142956000	Weak transcription	Thymus	Thymus
6	chr3:142950200-142955000	Weak transcription	GM12878-XiMat	blood
7	chr3:142951800-142955400	Weak transcription	K562	blood
8	chr3:142953200-142954400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:142953200-142957600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:142953800-142957600	Weak transcription	HSMM	muscle
11	chr3:142954000-142954200	Enhancers	Dnd41	blood
12	chr3:142954000-142954600	Enhancers	HSMMtube	muscle
13	chr3:142954000-142958400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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