Variant report

Variant	rs11708539
Chromosome Location	chr3:24381762-24381763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24379487..24381973-chr3:24384206..24386617,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13085323	0.81[EUR][1000 genomes]
rs73041659	1.00[ASN][1000 genomes]
rs9875048	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24357200-24383200	Weak transcription	Left Ventricle	heart
2	chr3:24357200-24383400	Weak transcription	Right Ventricle	heart
3	chr3:24357200-24393000	Weak transcription	Esophagus	oesophagus
4	chr3:24357600-24383200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:24358600-24383200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24361600-24384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24365800-24384000	Weak transcription	Psoas Muscle	Psoas
9	chr3:24370800-24383000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:24372000-24386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:24372400-24393200	Weak transcription	Fetal Stomach	stomach
12	chr3:24377000-24384200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:24377200-24384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:24377200-24384400	Weak transcription	Small Intestine	intestine
15	chr3:24377800-24390000	Weak transcription	Right Atrium	heart
16	chr3:24378800-24386400	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:24379200-24381800	Enhancers	Stomach Mucosa	stomach
18	chr3:24379200-24383400	Enhancers	Fetal Lung	lung
19	chr3:24379200-24385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:24379600-24393200	Weak transcription	Gastric	stomach
21	chr3:24380200-24386600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:24380800-24381800	Enhancers	Adipose Nuclei	Adipose
23	chr3:24380800-24382000	Enhancers	Liver	Liver
24	chr3:24380800-24382200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr3:24381000-24382000	Enhancers	Fetal Kidney	kidney
26	chr3:24381000-24382000	Enhancers	HepG2	liver
27	chr3:24381000-24387400	Enhancers	Colon Smooth Muscle	Colon
28	chr3:24381000-24394800	Weak transcription	Brain Germinal Matrix	brain
29	chr3:24381200-24384600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:24381400-24383000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:24381400-24383400	Weak transcription	Aorta	Aorta
32	chr3:24381400-24383400	Weak transcription	Fetal Intestine Small	intestine
33	chr3:24381400-24386400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:24381600-24382800	Weak transcription	K562	blood
35	chr3:24381600-24383000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:24381600-24383000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:24381600-24383200	Weak transcription	NHDF-Ad	bronchial
38	chr3:24381600-24386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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