Variant report

Variant	rs13085323
Chromosome Location	chr3:24383575-24383576
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24382041..24384823-chr3:24392425..24394516,2	K562	blood:
2	chr3:24382728..24384570-chr3:24386008..24388261,2	K562	blood:
3	chr3:24382413..24383987-chr3:24390785..24393314,2	MCF-7	breast:
4	chr3:24354788..24356355-chr3:24383091..24385499,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11708539	0.81[EUR][1000 genomes]
rs13072812	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs13086718	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs13095286	0.88[EUR][1000 genomes]
rs1394770	0.81[EUR][1000 genomes]
rs62255386	0.87[EUR][1000 genomes]
rs6550858	0.90[CEU][hapmap]
rs67870193	0.94[EUR][1000 genomes]
rs73043744	0.88[EUR][1000 genomes]
rs7642291	0.90[CEU][hapmap]
rs826231	1.00[JPT][hapmap]
rs9875048	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24357200-24393000	Weak transcription	Esophagus	oesophagus
2	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24361600-24384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:24365800-24384000	Weak transcription	Psoas Muscle	Psoas
5	chr3:24372000-24386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:24372400-24393200	Weak transcription	Fetal Stomach	stomach
7	chr3:24377000-24384200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:24377200-24384000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:24377200-24384400	Weak transcription	Small Intestine	intestine
10	chr3:24377800-24390000	Weak transcription	Right Atrium	heart
11	chr3:24378800-24386400	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:24379200-24385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:24379600-24393200	Weak transcription	Gastric	stomach
14	chr3:24380200-24386600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:24381000-24387400	Enhancers	Colon Smooth Muscle	Colon
16	chr3:24381000-24394800	Weak transcription	Brain Germinal Matrix	brain
17	chr3:24381200-24384600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:24381400-24386400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:24381600-24386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:24381800-24386200	Weak transcription	Adipose Nuclei	Adipose
21	chr3:24381800-24393200	Weak transcription	Stomach Mucosa	stomach
22	chr3:24382200-24386600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:24382800-24383800	Enhancers	K562	blood
24	chr3:24383000-24383600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:24383000-24383600	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:24383000-24384800	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:24383200-24383600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr3:24383200-24383600	Enhancers	NHDF-Ad	bronchial
29	chr3:24383200-24384200	Weak transcription	NHLF	lung
30	chr3:24383200-24384400	Enhancers	Left Ventricle	heart
31	chr3:24383200-24384400	Enhancers	Lung	lung
32	chr3:24383200-24384600	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr3:24383400-24383600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:24383400-24383600	Enhancers	Aorta	Aorta
35	chr3:24383400-24383600	Enhancers	Liver	Liver
36	chr3:24383400-24384200	Genic enhancers	Fetal Intestine Small	intestine
37	chr3:24383400-24384200	Weak transcription	Fetal Lung	lung
38	chr3:24383400-24384400	Enhancers	Right Ventricle	heart

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