Variant report

Variant	rs1394770
Chromosome Location	chr3:24385075-24385076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24383601..24387139-chr3:24393091..24396535,3	MCF-7	breast:
2	chr3:24385070..24386967-chr3:24394985..24396979,2	K562	blood:
3	chr3:24379487..24381973-chr3:24384206..24386617,2	MCF-7	breast:
4	chr3:24354788..24356355-chr3:24383091..24385499,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13072812	0.90[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13085323	0.81[EUR][1000 genomes]
rs13086718	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13095286	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62255386	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6550858	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67870193	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73043744	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7642291	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9875048	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24357200-24393000	Weak transcription	Esophagus	oesophagus
2	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24372000-24386000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:24372400-24393200	Weak transcription	Fetal Stomach	stomach
5	chr3:24377800-24390000	Weak transcription	Right Atrium	heart
6	chr3:24378800-24386400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:24379200-24385800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:24379600-24393200	Weak transcription	Gastric	stomach
9	chr3:24380200-24386600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:24381000-24387400	Enhancers	Colon Smooth Muscle	Colon
11	chr3:24381000-24394800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:24381400-24386400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:24381600-24386200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:24381800-24386200	Weak transcription	Adipose Nuclei	Adipose
15	chr3:24381800-24393200	Weak transcription	Stomach Mucosa	stomach
16	chr3:24382200-24386600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:24383600-24386200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:24383600-24387000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:24384200-24385200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:24384200-24385800	Enhancers	K562	blood
21	chr3:24384200-24386800	Enhancers	NHLF	lung
22	chr3:24384200-24389800	Weak transcription	Aorta	Aorta
23	chr3:24384400-24385200	Enhancers	HMEC	breast
24	chr3:24384400-24393000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:24384400-24393200	Weak transcription	Right Ventricle	heart
26	chr3:24384600-24385200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:24384600-24385200	Enhancers	Hela-S3	cervix
28	chr3:24384600-24385800	Enhancers	Muscle Satellite Cultured Cells	--
29	chr3:24384600-24385800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr3:24384800-24385200	Enhancers	NHDF-Ad	bronchial
31	chr3:24384800-24385800	Weak transcription	Liver	Liver
32	chr3:24384800-24386400	Weak transcription	Small Intestine	intestine
33	chr3:24384800-24386600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr3:24384800-24386600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:24384800-24393000	Weak transcription	Psoas Muscle	Psoas
36	chr3:24385000-24385200	Enhancers	Fetal Lung	lung
37	chr3:24385000-24386400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:24385000-24386400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:24385000-24393200	Weak transcription	Fetal Intestine Small	intestine

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