Variant report

Variant	rs11708664
Chromosome Location	chr3:17791027-17791028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17790074..17792070-chr3:17793547..17797014,3	K562	blood:
2	chr3:17783538..17785911-chr3:17789669..17791681,2	MCF-7	breast:
3	chr3:17782115..17785920-chr3:17786903..17792058,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131374	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62238360	0.90[ASN][1000 genomes]
rs9310525	0.81[CEU][hapmap];0.92[CHB][hapmap];0.80[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17784800-17794000	Weak transcription	Pancreas	Pancrea
2	chr3:17785000-17794000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:17788400-17791800	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:17788400-17792800	Enhancers	Primary B cells from cord blood	blood
5	chr3:17788800-17791600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:17789400-17794800	Weak transcription	HSMMtube	muscle
7	chr3:17789600-17795000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:17789800-17794000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:17790600-17791200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:17790600-17791200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:17790600-17791200	Enhancers	Dnd41	blood
12	chr3:17790600-17791600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:17790600-17791600	Enhancers	HMEC	breast
14	chr3:17790600-17791600	Enhancers	K562	blood
15	chr3:17790600-17791800	Flanking Active TSS	GM12878-XiMat	blood
16	chr3:17790600-17795200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:17790800-17791200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:17790800-17791200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr3:17790800-17791200	Enhancers	Primary T cells from cord blood	blood
20	chr3:17790800-17791200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr3:17790800-17791200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:17790800-17791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:17790800-17791200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:17790800-17791200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:17790800-17791200	Enhancers	Esophagus	oesophagus
26	chr3:17790800-17791200	Enhancers	Fetal Intestine Large	intestine
27	chr3:17790800-17791200	Enhancers	Fetal Intestine Small	intestine
28	chr3:17790800-17791200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr3:17790800-17791200	Enhancers	Small Intestine	intestine
30	chr3:17790800-17791200	Enhancers	Spleen	Spleen
31	chr3:17790800-17791200	Enhancers	A549	lung
32	chr3:17790800-17791200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr3:17790800-17791200	Enhancers	NHEK	skin
34	chr3:17790800-17791400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:17790800-17791400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:17790800-17791600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:17790800-17791600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr3:17790800-17791600	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr3:17790800-17791600	Enhancers	Fetal Thymus	thymus
40	chr3:17790800-17791600	Enhancers	Gastric	stomach
41	chr3:17790800-17791600	Enhancers	Right Atrium	heart
42	chr3:17790800-17791600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr3:17790800-17791600	Enhancers	Stomach Mucosa	stomach
44	chr3:17790800-17791800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:17791000-17791200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:17791000-17791200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:17791000-17791200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr3:17791000-17791200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr3:17791000-17791200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:17791000-17791200	Flanking Active TSS	Liver	Liver

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