Variant report

Variant	rs62238360
Chromosome Location	chr3:17780853-17780854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11708664	0.90[ASN][1000 genomes]
rs56221450	0.82[AMR][1000 genomes]
rs9284837	0.85[EUR][1000 genomes]
rs9310525	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17755400-17781600	Weak transcription	Pancreas	Pancrea
2	chr3:17756200-17782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:17756400-17782800	Weak transcription	Aorta	Aorta
4	chr3:17756600-17782200	Weak transcription	HSMM	muscle
5	chr3:17756800-17781600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:17756800-17782200	Weak transcription	NHLF	lung
7	chr3:17757200-17782200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:17757400-17781600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:17757400-17782400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:17757600-17781000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:17757600-17781600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:17757600-17782200	Weak transcription	Spleen	Spleen
13	chr3:17757600-17782400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:17757600-17783200	Weak transcription	Ovary	ovary
15	chr3:17759200-17782200	Weak transcription	HSMMtube	muscle
16	chr3:17759800-17781600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:17762200-17783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:17762600-17782400	Weak transcription	Psoas Muscle	Psoas
19	chr3:17764800-17782200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:17765000-17782200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:17765800-17781600	Weak transcription	HepG2	liver
22	chr3:17765800-17783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:17766400-17782200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr3:17767600-17781000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:17767600-17781600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:17767600-17781600	Weak transcription	Left Ventricle	heart
27	chr3:17767600-17782200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:17768000-17781000	Weak transcription	NHDF-Ad	bronchial
29	chr3:17768000-17781800	Weak transcription	Fetal Kidney	kidney
30	chr3:17768000-17782200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:17768200-17781400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:17768200-17781600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:17768200-17781600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:17768600-17781000	Weak transcription	Fetal Lung	lung
35	chr3:17770000-17782000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:17771200-17782200	Weak transcription	Fetal Stomach	stomach
37	chr3:17772000-17782200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr3:17772000-17782200	Weak transcription	Right Ventricle	heart
39	chr3:17772200-17782200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:17772200-17782200	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:17772400-17781200	Weak transcription	Osteobl	bone
42	chr3:17773200-17781000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:17773200-17781600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:17773200-17782400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr3:17775000-17782600	Weak transcription	Primary T cells from cord blood	blood
46	chr3:17775200-17781600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr3:17775400-17781200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr3:17775600-17781000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:17775800-17781800	Weak transcription	NH-A	brain
50	chr3:17776400-17781600	Weak transcription	Esophagus	oesophagus

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