Variant report

Variant	rs11709984
Chromosome Location	chr3:102073794-102073795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1025587	0.83[ASN][1000 genomes]
rs10511199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708291	0.83[ASN][1000 genomes]
rs11713795	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11713879	0.83[ASN][1000 genomes]
rs11721106	0.83[ASN][1000 genomes]
rs12330429	0.83[ASN][1000 genomes]
rs13318339	0.83[ASN][1000 genomes]
rs1435205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1479367	0.83[ASN][1000 genomes]
rs1479368	0.83[ASN][1000 genomes]
rs1479369	0.83[ASN][1000 genomes]
rs1479370	0.83[ASN][1000 genomes]
rs1479371	0.83[ASN][1000 genomes]
rs1479372	0.83[ASN][1000 genomes]
rs1533934	0.83[ASN][1000 genomes]
rs1585771	0.83[ASN][1000 genomes]
rs16844965	0.83[ASN][1000 genomes]
rs16844969	0.83[ASN][1000 genomes]
rs16844973	0.83[ASN][1000 genomes]
rs17353809	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17821641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849500	0.83[ASN][1000 genomes]
rs1871390	0.83[ASN][1000 genomes]
rs1916349	1.00[ASN][1000 genomes]
rs1978766	0.83[ASN][1000 genomes]
rs2127287	0.83[ASN][1000 genomes]
rs2398725	0.83[ASN][1000 genomes]
rs28576056	0.83[ASN][1000 genomes]
rs28777721	0.83[ASN][1000 genomes]
rs28785007	0.83[ASN][1000 genomes]
rs28881234	0.83[ASN][1000 genomes]
rs4399866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544591	1.00[ASN][1000 genomes]
rs4635682	0.83[ASN][1000 genomes]
rs57084295	0.83[ASN][1000 genomes]
rs57525692	0.83[ASN][1000 genomes]
rs57713790	0.83[ASN][1000 genomes]
rs58593283	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60296784	0.83[ASN][1000 genomes]
rs60652145	0.83[ASN][1000 genomes]
rs6441658	0.83[ASN][1000 genomes]
rs6441659	0.83[ASN][1000 genomes]
rs6441660	0.83[ASN][1000 genomes]
rs6441661	0.83[ASN][1000 genomes]
rs66915728	0.83[ASN][1000 genomes]
rs67168574	0.83[ASN][1000 genomes]
rs67439644	0.83[ASN][1000 genomes]
rs67540811	0.83[ASN][1000 genomes]
rs6768032	0.83[ASN][1000 genomes]
rs6768311	0.83[ASN][1000 genomes]
rs6771629	0.83[ASN][1000 genomes]
rs6772839	0.83[ASN][1000 genomes]
rs6775798	0.83[ASN][1000 genomes]
rs67774121	0.83[ASN][1000 genomes]
rs6778203	0.83[ASN][1000 genomes]
rs6778404	0.83[ASN][1000 genomes]
rs6781453	0.83[ASN][1000 genomes]
rs6781765	0.83[ASN][1000 genomes]
rs6782207	0.83[ASN][1000 genomes]
rs68004259	0.83[ASN][1000 genomes]
rs73157404	0.83[ASN][1000 genomes]
rs7611152	0.83[ASN][1000 genomes]
rs7619156	0.83[ASN][1000 genomes]
rs7621246	0.83[ASN][1000 genomes]
rs7623736	0.83[ASN][1000 genomes]
rs7625204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639053	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652085	0.83[ASN][1000 genomes]
rs892791	0.83[ASN][1000 genomes]
rs899483	0.83[ASN][1000 genomes]
rs9814672	0.83[ASN][1000 genomes]
rs9819718	0.83[ASN][1000 genomes]
rs9825340	0.83[ASN][1000 genomes]
rs9825736	0.83[ASN][1000 genomes]
rs9828984	0.83[ASN][1000 genomes]
rs9829127	0.83[ASN][1000 genomes]
rs9834628	0.83[ASN][1000 genomes]
rs9835728	0.83[ASN][1000 genomes]
rs9839732	0.83[ASN][1000 genomes]
rs9843713	0.83[ASN][1000 genomes]
rs985375	0.83[ASN][1000 genomes]
rs9862517	0.83[ASN][1000 genomes]
rs9864968	0.83[ASN][1000 genomes]
rs9865158	0.83[ASN][1000 genomes]
rs9868222	0.83[ASN][1000 genomes]
rs9869334	0.83[ASN][1000 genomes]
rs9879454	0.83[ASN][1000 genomes]
rs9883410	0.83[ASN][1000 genomes]
rs9883780	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102072000-102074200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:102072000-102074800	Enhancers	NHEK	skin
3	chr3:102072000-102075000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:102072000-102075000	Enhancers	HMEC	breast
5	chr3:102072000-102076600	Enhancers	Hela-S3	cervix
6	chr3:102072400-102074000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:102072600-102080000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:102073400-102074600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:102073400-102074600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:102073600-102073800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:102073600-102074400	Enhancers	HSMMtube	muscle
12	chr3:102073600-102076600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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