Variant report

Variant	rs1533934
Chromosome Location	chr3:102176125-102176126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102170010..102172131-chr3:102173986..102176853,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10212280	1.00[JPT][hapmap]
rs1025587	1.00[JPT][hapmap]
rs10511199	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11708291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708991	1.00[JPT][hapmap]
rs11709984	0.83[ASN][1000 genomes]
rs11721106	1.00[JPT][hapmap]
rs12330429	1.00[JPT][hapmap]
rs13317566	1.00[JPT][hapmap]
rs13318339	1.00[JPT][hapmap]
rs1435205	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1479367	1.00[JPT][hapmap]
rs1479368	1.00[JPT][hapmap]
rs1479369	1.00[JPT][hapmap]
rs1479371	1.00[JPT][hapmap]
rs1479372	1.00[JPT][hapmap]
rs1585771	1.00[JPT][hapmap]
rs1585775	1.00[JPT][hapmap]
rs16844949	1.00[JPT][hapmap]
rs16844965	1.00[JPT][hapmap]
rs16844969	1.00[JPT][hapmap]
rs16844973	1.00[JPT][hapmap]
rs17353809	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17769826	1.00[JPT][hapmap]
rs17820915	1.00[JPT][hapmap]
rs17821641	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1849500	0.86[CEU][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1916349	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1978766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2127287	1.00[JPT][hapmap]
rs2127289	1.00[JPT][hapmap]
rs2398725	1.00[JPT][hapmap]
rs4399866	0.83[ASN][1000 genomes]
rs4544591	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4566515	1.00[JPT][hapmap]
rs4635682	1.00[JPT][hapmap]
rs57525692	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58593283	0.83[ASN][1000 genomes]
rs6441658	1.00[JPT][hapmap]
rs6441659	1.00[JPT][hapmap]
rs6441660	1.00[JPT][hapmap]
rs6441661	1.00[JPT][hapmap]
rs6768032	1.00[JPT][hapmap]
rs6768311	1.00[JPT][hapmap]
rs6772839	1.00[JPT][hapmap]
rs6778404	1.00[JPT][hapmap]
rs6781453	1.00[JPT][hapmap]
rs6781765	1.00[JPT][hapmap]
rs6786800	1.00[JPT][hapmap]
rs7611152	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616427	1.00[JPT][hapmap]
rs7619156	1.00[JPT][hapmap]
rs7621246	1.00[JPT][hapmap]
rs7623736	1.00[JPT][hapmap]
rs7625204	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7636808	1.00[JPT][hapmap]
rs7639053	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7650734	1.00[JPT][hapmap]
rs7651247	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs7652085	1.00[JPT][hapmap]
rs7653190	1.00[JPT][hapmap]
rs892791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899483	1.00[JPT][hapmap]
rs9819718	1.00[JPT][hapmap]
rs9822998	1.00[JPT][hapmap]
rs9825736	1.00[JPT][hapmap]
rs9828984	1.00[JPT][hapmap]
rs9829127	1.00[JPT][hapmap]
rs9834628	1.00[JPT][hapmap]
rs9835728	1.00[JPT][hapmap]
rs9843713	1.00[JPT][hapmap]
rs9862517	1.00[JPT][hapmap]
rs9864968	1.00[JPT][hapmap]
rs9865839	1.00[JPT][hapmap]
rs9868222	1.00[JPT][hapmap]
rs9869334	1.00[JPT][hapmap]
rs9883410	1.00[JPT][hapmap]
rs9883780	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102170800-102179200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:102172600-102176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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