Variant report

Variant	rs1585775
Chromosome Location	chr3:101999125-101999126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10212280	1.00[JPT][hapmap]
rs1025587	1.00[JPT][hapmap]
rs10511199	1.00[JPT][hapmap]
rs11708036	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11708991	1.00[JPT][hapmap]
rs11712976	0.87[AFR][1000 genomes]
rs11716985	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes]
rs11721106	1.00[JPT][hapmap]
rs12330429	1.00[JPT][hapmap]
rs13317566	1.00[JPT][hapmap]
rs13318339	1.00[JPT][hapmap]
rs1435205	1.00[JPT][hapmap]
rs1479367	1.00[JPT][hapmap]
rs1479368	1.00[JPT][hapmap]
rs1479369	1.00[JPT][hapmap]
rs1479371	1.00[JPT][hapmap]
rs1479372	1.00[JPT][hapmap]
rs1533934	1.00[JPT][hapmap]
rs1585771	1.00[JPT][hapmap]
rs16844949	1.00[JPT][hapmap]
rs16844965	1.00[JPT][hapmap]
rs16844969	1.00[JPT][hapmap]
rs16844973	1.00[JPT][hapmap]
rs17353809	1.00[JPT][hapmap]
rs17769826	1.00[JPT][hapmap]
rs17820915	1.00[JPT][hapmap]
rs17821641	1.00[JPT][hapmap]
rs17822656	1.00[LWK][hapmap]
rs1849500	1.00[JPT][hapmap]
rs1916349	1.00[JPT][hapmap]
rs2127287	1.00[JPT][hapmap]
rs2127289	1.00[JPT][hapmap]
rs2398725	1.00[JPT][hapmap]
rs4544591	1.00[JPT][hapmap]
rs4566515	0.83[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4635682	1.00[JPT][hapmap]
rs58002972	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59740756	0.84[EUR][1000 genomes]
rs6441658	1.00[JPT][hapmap]
rs6441659	1.00[JPT][hapmap]
rs6441660	1.00[JPT][hapmap]
rs6441661	1.00[JPT][hapmap]
rs6768032	1.00[JPT][hapmap]
rs6768311	1.00[JPT][hapmap]
rs6772839	1.00[JPT][hapmap]
rs6778404	1.00[JPT][hapmap]
rs6781453	1.00[JPT][hapmap]
rs6781765	1.00[JPT][hapmap]
rs6786800	1.00[JPT][hapmap]
rs72947064	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72947069	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72947082	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949082	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949091	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7616427	1.00[JPT][hapmap]
rs7619156	1.00[JPT][hapmap]
rs7621246	1.00[JPT][hapmap]
rs7623736	1.00[JPT][hapmap]
rs7625204	1.00[JPT][hapmap]
rs7636808	1.00[JPT][hapmap]
rs7637411	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639053	1.00[JPT][hapmap]
rs7650734	1.00[JPT][hapmap]
rs7651247	1.00[JPT][hapmap]
rs7652085	1.00[JPT][hapmap]
rs7653190	1.00[JPT][hapmap]
rs899483	1.00[JPT][hapmap]
rs9819718	1.00[JPT][hapmap]
rs9822998	1.00[JPT][hapmap]
rs9825736	1.00[JPT][hapmap]
rs9828984	1.00[JPT][hapmap]
rs9829127	1.00[JPT][hapmap]
rs9834628	1.00[JPT][hapmap]
rs9835728	1.00[JPT][hapmap]
rs9843713	1.00[JPT][hapmap]
rs9862517	1.00[JPT][hapmap]
rs9864968	1.00[JPT][hapmap]
rs9865839	1.00[JPT][hapmap]
rs9868222	1.00[JPT][hapmap]
rs9869334	1.00[JPT][hapmap]
rs9883410	1.00[JPT][hapmap]
rs9883780	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1585775	PIF1	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101968400-102016200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:101997200-101999400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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