Variant report
| Variant | rs17820915 |
|---|---|
| Chromosome Location | chr3:102042098-102042099 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:95)
| rs_ID | r2[population] |
|---|---|
| rs10048914 | 1.00[JPT][hapmap] |
| rs10212280 | 1.00[JPT][hapmap] |
| rs1025587 | 1.00[JPT][hapmap] |
| rs10511199 | 1.00[JPT][hapmap] |
| rs11708036 | 1.00[ASN][1000 genomes] |
| rs11708991 | 1.00[JPT][hapmap] |
| rs11720144 | 1.00[JPT][hapmap] |
| rs11721106 | 1.00[JPT][hapmap] |
| rs12233481 | 1.00[JPT][hapmap] |
| rs12330429 | 1.00[JPT][hapmap] |
| rs13315672 | 1.00[JPT][hapmap] |
| rs13317566 | 1.00[JPT][hapmap] |
| rs13318339 | 1.00[JPT][hapmap] |
| rs1435204 | 1.00[JPT][hapmap] |
| rs1435205 | 1.00[JPT][hapmap] |
| rs1473269 | 1.00[JPT][hapmap] |
| rs1479367 | 1.00[JPT][hapmap] |
| rs1479368 | 1.00[JPT][hapmap] |
| rs1479369 | 1.00[JPT][hapmap] |
| rs1479371 | 1.00[JPT][hapmap] |
| rs1479372 | 1.00[JPT][hapmap] |
| rs1533934 | 1.00[JPT][hapmap] |
| rs1585771 | 1.00[JPT][hapmap] |
| rs1585775 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16844949 | 1.00[JPT][hapmap] |
| rs16844965 | 1.00[JPT][hapmap] |
| rs16844969 | 1.00[JPT][hapmap] |
| rs16844973 | 1.00[JPT][hapmap] |
| rs17353809 | 1.00[JPT][hapmap] |
| rs17769826 | 1.00[JPT][hapmap] |
| rs17821641 | 1.00[JPT][hapmap] |
| rs17822800 | 1.00[JPT][hapmap] |
| rs17822848 | 1.00[JPT][hapmap] |
| rs1849500 | 1.00[JPT][hapmap] |
| rs1916349 | 1.00[JPT][hapmap] |
| rs2127287 | 1.00[JPT][hapmap] |
| rs2127289 | 1.00[JPT][hapmap] |
| rs2164264 | 1.00[JPT][hapmap] |
| rs2398725 | 1.00[JPT][hapmap] |
| rs3891857 | 1.00[JPT][hapmap] |
| rs4544591 | 1.00[JPT][hapmap] |
| rs4566515 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4635682 | 1.00[JPT][hapmap] |
| rs58002972 | 1.00[ASN][1000 genomes] |
| rs6441658 | 1.00[JPT][hapmap] |
| rs6441659 | 1.00[JPT][hapmap] |
| rs6441660 | 1.00[JPT][hapmap] |
| rs6441661 | 1.00[JPT][hapmap] |
| rs6768032 | 1.00[JPT][hapmap] |
| rs6768311 | 1.00[JPT][hapmap] |
| rs6772839 | 1.00[JPT][hapmap] |
| rs6778404 | 1.00[JPT][hapmap] |
| rs6781453 | 1.00[JPT][hapmap] |
| rs6781765 | 1.00[JPT][hapmap] |
| rs6784826 | 1.00[JPT][hapmap] |
| rs6786800 | 1.00[JPT][hapmap] |
| rs6807210 | 1.00[JPT][hapmap] |
| rs72947064 | 1.00[ASN][1000 genomes] |
| rs72947069 | 1.00[ASN][1000 genomes] |
| rs72947082 | 1.00[ASN][1000 genomes] |
| rs72949082 | 1.00[ASN][1000 genomes] |
| rs72949091 | 1.00[ASN][1000 genomes] |
| rs7616427 | 1.00[JPT][hapmap] |
| rs7619156 | 1.00[JPT][hapmap] |
| rs7621246 | 1.00[JPT][hapmap] |
| rs7623736 | 1.00[JPT][hapmap] |
| rs7625204 | 1.00[JPT][hapmap] |
| rs7636808 | 1.00[JPT][hapmap] |
| rs7637411 | 1.00[ASN][1000 genomes] |
| rs7639053 | 1.00[JPT][hapmap] |
| rs7650734 | 1.00[JPT][hapmap] |
| rs7651247 | 1.00[JPT][hapmap] |
| rs7652085 | 1.00[JPT][hapmap] |
| rs7653190 | 1.00[JPT][hapmap] |
| rs899483 | 1.00[JPT][hapmap] |
| rs9290704 | 1.00[JPT][hapmap] |
| rs9819718 | 1.00[JPT][hapmap] |
| rs9822998 | 1.00[JPT][hapmap] |
| rs9825736 | 1.00[JPT][hapmap] |
| rs9828984 | 1.00[JPT][hapmap] |
| rs9829127 | 1.00[JPT][hapmap] |
| rs9834628 | 1.00[JPT][hapmap] |
| rs9835728 | 1.00[JPT][hapmap] |
| rs9843713 | 1.00[JPT][hapmap] |
| rs9852572 | 1.00[JPT][hapmap] |
| rs9859640 | 1.00[JPT][hapmap] |
| rs9861348 | 1.00[JPT][hapmap] |
| rs9862517 | 1.00[JPT][hapmap] |
| rs9864968 | 1.00[JPT][hapmap] |
| rs9865839 | 1.00[JPT][hapmap] |
| rs9868222 | 1.00[JPT][hapmap] |
| rs9869334 | 1.00[JPT][hapmap] |
| rs9870734 | 1.00[JPT][hapmap] |
| rs9883410 | 1.00[JPT][hapmap] |
| rs9883780 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497784 | chr3:101315009-102092989 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014077 | chr3:102032787-102066539 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
