Variant report

Variant	rs12233481
Chromosome Location	chr3:102150998-102150999
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10048914	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10511195	1.00[CHB][hapmap]
rs10937024	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11714669	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs11720144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11927258	0.82[TSI][hapmap]
rs12054046	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13315672	1.00[JPT][hapmap]
rs1435204	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1435206	0.82[TSI][hapmap]
rs1473269	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.82[ASN][1000 genomes]
rs16845024	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16845027	1.00[CHB][hapmap]
rs16845049	1.00[CHB][hapmap]
rs17820915	1.00[JPT][hapmap]
rs17822800	1.00[JPT][hapmap]
rs17822848	1.00[JPT][hapmap]
rs1967598	0.82[ASN][1000 genomes]
rs2013942	1.00[CHB][hapmap]
rs2164264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3891857	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272477	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6784362	1.00[CHB][hapmap]
rs6784389	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6784826	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs6807210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7626999	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7646053	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7653110	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9290704	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9811444	1.00[CHD][hapmap]
rs9852572	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9859640	1.00[JPT][hapmap]
rs9861348	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9870734	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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