Variant report

Variant	rs2013942
Chromosome Location	chr3:102184308-102184309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102184197..102185596-chr3:102248087..102248957,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10511195	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10511196	1.00[CEU][hapmap]
rs10511197	0.83[CEU][hapmap]
rs10511198	0.84[CEU][hapmap]
rs10937019	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10937024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[MKK][hapmap]
rs11714669	1.00[CHB][hapmap]
rs11720144	1.00[CHB][hapmap]
rs12054046	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[MKK][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12233481	1.00[CHB][hapmap]
rs1435204	1.00[CHB][hapmap]
rs16844993	0.81[CEU][hapmap]
rs16845024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[MKK][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16845027	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16845049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2164264	1.00[CHB][hapmap]
rs55925410	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272479	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62272480	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272481	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272482	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272483	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272484	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272486	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62272490	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272491	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272492	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274720	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274721	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274723	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274724	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62274726	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274728	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274729	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62274730	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274731	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62274734	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784362	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6784389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[MKK][hapmap]
rs6807210	1.00[CHB][hapmap]
rs73146520	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7624802	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7626999	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[MKK][hapmap]
rs7653110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102179800-102184600	Weak transcription	Hela-S3	cervix
2	chr3:102183800-102185000	Enhancers	Duodenum Mucosa	Duodenum

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