Variant report

Variant	rs16844993
Chromosome Location	chr3:102090888-102090889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10511195	0.81[CEU][hapmap]
rs10511196	0.81[CEU][hapmap]
rs10511197	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10511198	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10937019	0.84[AMR][1000 genomes]
rs10937024	0.81[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs1108689	1.00[CHD][hapmap];0.88[JPT][hapmap]
rs11927258	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap]
rs12054046	0.81[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs1369350	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1382787	0.88[JPT][hapmap]
rs1435206	0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs16845024	0.81[CEU][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes]
rs16845027	0.84[AMR][1000 genomes]
rs16845049	0.81[CEU][hapmap]
rs1842174	0.83[EUR][1000 genomes]
rs2013942	0.81[CEU][hapmap]
rs2127286	0.83[EUR][1000 genomes]
rs55654405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55891453	0.85[ASN][1000 genomes]
rs56057951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56132352	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56224182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274669	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62274710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62274720	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274721	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274723	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274724	0.83[AMR][1000 genomes]
rs62274726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274728	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274729	0.83[AMR][1000 genomes]
rs62274730	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274731	0.81[EUR][1000 genomes]
rs62274734	0.84[AMR][1000 genomes]
rs6766223	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs6784362	0.81[CEU][hapmap]
rs6784389	0.81[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs6804554	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs73144596	0.81[ASN][1000 genomes]
rs73146520	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73157654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615419	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs7624802	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7626999	0.82[MEX][hapmap];0.86[TSI][hapmap]
rs7646053	0.81[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs7653110	0.81[CEU][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv979777	chr3:102087816-102091515	Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv460790	chr3:102089007-102100781	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv460791	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv591189	chr3:102089007-102100781	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102075600-102096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links