Variant report
| Variant | rs6766223 |
|---|---|
| Chromosome Location | chr3:102100781-102100782 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10511197 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs10511198 | 0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1108689 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap] |
| rs11927258 | 0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs13317906 | 1.00[CHB][hapmap] |
| rs1369350 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs1382787 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs1435206 | 0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs16844993 | 0.92[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs55654405 | 0.89[ASN][1000 genomes] |
| rs55891453 | 0.81[ASN][1000 genomes] |
| rs56057951 | 0.89[ASN][1000 genomes] |
| rs56132352 | 0.85[ASN][1000 genomes] |
| rs56224182 | 0.89[ASN][1000 genomes] |
| rs62274710 | 0.89[ASN][1000 genomes] |
| rs62274711 | 0.87[ASN][1000 genomes] |
| rs6804554 | 0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs73144596 | 0.85[ASN][1000 genomes] |
| rs73157654 | 0.89[ASN][1000 genomes] |
| rs7615419 | 0.88[CHB][hapmap];0.88[JPT][hapmap] |
| rs985376 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877227 | chr3:102067254-102184308 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv460790 | chr3:102089007-102100781 | Flanking Active TSS Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv460791 | chr3:102089007-102100781 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv591189 | chr3:102089007-102100781 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6766223 | CBLB | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
