Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10048914	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs10511197	0.88[CHB][hapmap]
rs10511198	0.88[CHB][hapmap]
rs1108689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11927258	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs13315672	0.86[CEU][hapmap]
rs1369350	0.88[CHB][hapmap]
rs1382787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1435206	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3891857	0.82[CEU][hapmap]
rs55891453	0.85[ASN][1000 genomes]
rs62274669	0.83[ASN][1000 genomes]
rs6766223	1.00[CHB][hapmap]
rs6784826	0.82[CEU][hapmap]
rs6804554	0.88[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs73144596	0.81[ASN][1000 genomes]
rs7615419	0.88[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9290704	0.81[CEU][hapmap]
rs9852572	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs985374	0.86[JPT][hapmap]
rs985376	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870734	0.85[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1014077	chr3:102032787-102066539	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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