Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10048914	0.85[CEU][hapmap]
rs10511197	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs10511198	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1108689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11927258	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs13315672	0.85[CEU][hapmap]
rs13317906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1369350	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1435206	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16844993	0.88[JPT][hapmap]
rs17822656	0.88[JPT][hapmap]
rs28869577	0.81[EUR][1000 genomes]
rs3891857	0.82[CEU][hapmap]
rs6766223	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs6784826	0.82[CEU][hapmap]
rs6804554	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7615419	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9290704	0.82[CEU][hapmap]
rs9842632	0.80[EUR][1000 genomes]
rs9852572	0.85[CEU][hapmap]
rs985376	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9859640	0.82[CEU][hapmap]
rs9861348	0.82[CEU][hapmap]
rs9870734	0.85[CEU][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101968400-102016200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:102012800-102014600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:102014000-102014400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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