Variant report

Variant	rs10048914
Chromosome Location	chr3:102115090-102115091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102113340..102116015-chr3:102116422..102118729,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1108689	0.85[CEU][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs11720144	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12233481	1.00[JPT][hapmap]
rs13315672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13317906	0.86[CEU][hapmap]
rs1382787	0.85[CEU][hapmap]
rs1435204	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1473269	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17820915	1.00[JPT][hapmap]
rs17822800	1.00[JPT][hapmap]
rs17822848	1.00[JPT][hapmap]
rs1967598	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2164264	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3891857	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62272477	0.86[ASN][1000 genomes]
rs6784826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6807210	1.00[JPT][hapmap]
rs9290704	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811444	1.00[CHB][hapmap]
rs9852572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985376	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9859640	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9861348	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9867423	1.00[CHB][hapmap]
rs9870734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102111400-102117200	Weak transcription	Fetal Brain Male	brain
2	chr3:102113800-102117200	Weak transcription	NHEK	skin
3	chr3:102113800-102118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:102114000-102118000	Weak transcription	HMEC	breast
5	chr3:102114000-102119000	Weak transcription	HSMM	muscle
6	chr3:102114200-102117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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