Variant report

Variant	rs9811444
Chromosome Location	chr3:102116525-102116526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:102113340..102116015-chr3:102116422..102118729,2	MCF-7	breast:
2	chr3:102115274..102117462-chr3:102120586..102123538,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10048914	1.00[CHB][hapmap]
rs10511195	1.00[JPT][hapmap]
rs10937019	0.94[ASN][1000 genomes]
rs10937024	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11720144	1.00[CHD][hapmap]
rs12054046	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12233481	1.00[CHD][hapmap]
rs13315672	1.00[CHB][hapmap]
rs1473269	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs16845024	1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16845027	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16845049	1.00[JPT][hapmap]
rs2164264	1.00[CHD][hapmap]
rs3891857	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs55925410	0.82[ASN][1000 genomes]
rs62272479	0.82[ASN][1000 genomes]
rs62272480	0.82[ASN][1000 genomes]
rs62272481	0.82[ASN][1000 genomes]
rs62272482	0.82[ASN][1000 genomes]
rs62272483	0.82[ASN][1000 genomes]
rs62272484	0.82[ASN][1000 genomes]
rs62272486	0.82[ASN][1000 genomes]
rs62274720	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274721	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274723	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274724	0.94[ASN][1000 genomes]
rs62274726	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274728	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274729	0.94[ASN][1000 genomes]
rs62274730	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274731	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62274734	0.94[ASN][1000 genomes]
rs6784362	1.00[JPT][hapmap]
rs6784389	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6784826	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs73146520	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7624802	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7626999	1.00[CHD][hapmap]
rs7646053	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7653110	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9290704	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9852572	1.00[CHB][hapmap]
rs9859640	1.00[CHB][hapmap]
rs9861348	1.00[CHB][hapmap]
rs9867423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870734	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102111400-102117200	Weak transcription	Fetal Brain Male	brain
2	chr3:102113800-102117200	Weak transcription	NHEK	skin
3	chr3:102113800-102118600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:102114000-102118000	Weak transcription	HMEC	breast
5	chr3:102114000-102119000	Weak transcription	HSMM	muscle
6	chr3:102114200-102117600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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