Variant report

Variant	rs1369350
Chromosome Location	chr3:102047060-102047061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511195	1.00[YRI][hapmap]
rs10511197	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10511198	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10937019	0.80[AMR][1000 genomes]
rs10937024	1.00[YRI][hapmap]
rs1108689	0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs11927258	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12054046	1.00[YRI][hapmap]
rs13317906	0.88[CHB][hapmap]
rs1382787	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1435206	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16844993	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16845024	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs16845027	0.80[AMR][1000 genomes]
rs16845049	1.00[YRI][hapmap]
rs1842174	0.87[EUR][1000 genomes]
rs2127286	0.87[EUR][1000 genomes]
rs55654405	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56057951	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56132352	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56224182	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62274669	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62274710	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62274711	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62274721	0.80[AMR][1000 genomes]
rs62274728	0.80[AMR][1000 genomes]
rs62274730	0.80[AMR][1000 genomes]
rs62274734	0.80[AMR][1000 genomes]
rs6766223	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6784362	1.00[YRI][hapmap]
rs6784389	1.00[YRI][hapmap]
rs6804554	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs73146520	0.80[AMR][1000 genomes]
rs73157654	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7615419	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7624802	0.80[AMR][1000 genomes]
rs7646053	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1014077	chr3:102032787-102066539	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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