Variant report

Variant	rs1842174
Chromosome Location	chr3:102004975-102004976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10511197	0.83[EUR][1000 genomes]
rs10511198	0.83[EUR][1000 genomes]
rs1072718	0.82[ASN][1000 genomes]
rs11706182	0.82[ASN][1000 genomes]
rs11921013	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1585772	0.82[ASN][1000 genomes]
rs1600328	0.82[ASN][1000 genomes]
rs1600329	0.82[ASN][1000 genomes]
rs16844993	0.83[EUR][1000 genomes]
rs1842175	0.82[ASN][1000 genomes]
rs1842176	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1904343	0.82[ASN][1000 genomes]
rs2086268	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2100993	0.82[ASN][1000 genomes]
rs2127286	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2169960	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2199752	0.82[ASN][1000 genomes]
rs28883723	0.82[ASN][1000 genomes]
rs55654405	0.83[EUR][1000 genomes]
rs56057951	0.83[EUR][1000 genomes]
rs56132352	0.80[EUR][1000 genomes]
rs56224182	0.83[EUR][1000 genomes]
rs60457637	0.82[ASN][1000 genomes]
rs60829137	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62274664	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62274665	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62274669	0.88[EUR][1000 genomes]
rs62274710	0.83[EUR][1000 genomes]
rs62274711	0.83[EUR][1000 genomes]
rs6441654	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6441656	0.82[ASN][1000 genomes]
rs6762916	0.82[ASN][1000 genomes]
rs6796547	0.82[ASN][1000 genomes]
rs6799239	0.82[ASN][1000 genomes]
rs73157654	0.83[EUR][1000 genomes]
rs7611268	0.82[ASN][1000 genomes]
rs7613259	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9810822	0.88[ASN][1000 genomes]
rs9827415	0.88[ASN][1000 genomes]
rs9838271	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101968400-102016200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:102002000-102009400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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