Variant report

Variant	rs2086268
Chromosome Location	chr3:102002301-102002302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1072718	0.86[ASN][1000 genomes]
rs11706182	0.86[ASN][1000 genomes]
rs11921013	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1585772	0.86[ASN][1000 genomes]
rs1600328	0.86[ASN][1000 genomes]
rs1600329	0.86[ASN][1000 genomes]
rs1842174	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1842175	0.86[ASN][1000 genomes]
rs1842176	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904343	0.86[ASN][1000 genomes]
rs2100993	0.86[ASN][1000 genomes]
rs2127286	0.88[ASN][1000 genomes]
rs2169960	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2199752	0.86[ASN][1000 genomes]
rs28883723	0.86[ASN][1000 genomes]
rs60457637	0.86[ASN][1000 genomes]
rs60829137	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62274664	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62274665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441654	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6441656	0.86[ASN][1000 genomes]
rs6441657	0.83[ASN][1000 genomes]
rs6762916	0.86[ASN][1000 genomes]
rs6796547	0.86[ASN][1000 genomes]
rs6799239	0.86[ASN][1000 genomes]
rs7611268	0.86[ASN][1000 genomes]
rs7613259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810822	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9827415	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9838271	0.86[ASN][1000 genomes]
rs9842632	0.83[ASN][1000 genomes]
rs9880411	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101968400-102016200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:102001400-102003200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:102002000-102003000	Enhancers	Fetal Muscle Leg	muscle
4	chr3:102002000-102009400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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