Variant report

Variant	rs56057951
Chromosome Location	chr3:102082031-102082032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10511198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10937019	0.84[AMR][1000 genomes]
rs11927258	0.85[ASN][1000 genomes]
rs1435206	0.85[ASN][1000 genomes]
rs16844993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16845024	0.84[AMR][1000 genomes]
rs16845027	0.84[AMR][1000 genomes]
rs1842174	0.83[EUR][1000 genomes]
rs2127286	0.83[EUR][1000 genomes]
rs55654405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55891453	0.87[ASN][1000 genomes]
rs56132352	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56224182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62274669	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62274710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62274711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62274720	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274721	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274723	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274724	0.83[AMR][1000 genomes]
rs62274726	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274728	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274729	0.83[AMR][1000 genomes]
rs62274730	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62274731	0.81[EUR][1000 genomes]
rs62274734	0.84[AMR][1000 genomes]
rs6804554	0.85[ASN][1000 genomes]
rs73144596	0.83[ASN][1000 genomes]
rs73146520	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73157654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615419	0.84[ASN][1000 genomes]
rs7624802	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs985376	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102075600-102096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:102079600-102083600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:102082000-102082600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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