Variant report
| Variant | rs11714669 |
|---|---|
| Chromosome Location | chr3:102155908-102155909 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10048914 | 0.95[ASN][1000 genomes] |
| rs10511195 | 1.00[CHB][hapmap] |
| rs10937024 | 1.00[CHB][hapmap] |
| rs11720144 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12054046 | 1.00[CHB][hapmap] |
| rs12233481 | 0.96[CEU][hapmap];1.00[CHB][hapmap] |
| rs1435204 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1473269 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs16845024 | 1.00[CHB][hapmap] |
| rs16845027 | 1.00[CHB][hapmap] |
| rs16845049 | 1.00[CHB][hapmap] |
| rs1967598 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2013942 | 1.00[CHB][hapmap] |
| rs2164264 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3891857 | 0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62272477 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6784362 | 1.00[CHB][hapmap] |
| rs6784389 | 1.00[CHB][hapmap] |
| rs6807210 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7626999 | 1.00[CHB][hapmap] |
| rs7646053 | 1.00[CHB][hapmap] |
| rs7653110 | 1.00[CHB][hapmap] |
| rs9290704 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9852572 | 0.95[ASN][1000 genomes] |
| rs9861348 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9870734 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877227 | chr3:102067254-102184308 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007340 | chr3:102108954-102725099 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv536676 | chr3:102108954-102725099 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
