Variant report

Variant	rs11710944
Chromosome Location	chr3:24635351-24635352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24315110..24317953-chr3:24633288..24636026,3	MCF-7	breast:
2	chr3:24534908..24536428-chr3:24635223..24637063,2	MCF-7	breast:
3	chr3:24633657..24635628-chr3:24639189..24641484,2	MCF-7	breast:
4	chr3:24535097..24538455-chr3:24631744..24636761,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11710847	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2043582	0.99[EUR][1000 genomes]
rs2043583	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs2099518	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2117877	0.88[CEU][hapmap]
rs6794846	0.96[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7647540	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930318	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9850443	0.91[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24630800-24640800	Weak transcription	Small Intestine	intestine
2	chr3:24631200-24636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:24632000-24636200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24632000-24637200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:24632000-24640000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:24632200-24635800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:24632200-24637200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:24633200-24640000	Weak transcription	Fetal Lung	lung
9	chr3:24633600-24637000	Weak transcription	Stomach Mucosa	stomach
10	chr3:24633600-24640000	Weak transcription	NHDF-Ad	bronchial
11	chr3:24633800-24636000	Weak transcription	Fetal Brain Male	brain
12	chr3:24633800-24637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:24633800-24639600	Weak transcription	HUVEC	blood vessel
14	chr3:24633800-24640200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:24634200-24635600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:24634200-24640000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:24634400-24635400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:24634400-24636800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:24634600-24635600	Weak transcription	HMEC	breast
20	chr3:24634600-24636600	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24634600-24637000	Weak transcription	NHEK	skin
22	chr3:24634600-24637200	Weak transcription	Fetal Intestine Large	intestine
23	chr3:24634600-24637200	Weak transcription	Hela-S3	cervix
24	chr3:24635200-24635600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:24635200-24635600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr3:24635200-24635800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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