Variant report

Variant	rs6794846
Chromosome Location	chr3:24623322-24623323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11710847	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11710944	0.96[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1992041	0.82[AFR][1000 genomes]
rs2043582	0.88[EUR][1000 genomes]
rs2043583	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2099518	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2117877	0.92[CEU][hapmap]
rs2196437	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7647540	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs768943	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs930318	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9850443	0.96[CEU][hapmap];0.90[JPT][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24617800-24623400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
3	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:24621200-24624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:24621200-24624200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:24621200-24633400	Weak transcription	K562	blood
8	chr3:24621400-24624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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