Variant report

Variant	rs11711737
Chromosome Location	chr3:156533003-156533004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156532815-156536469	GM12878	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156426710..156429156-chr3:156532890..156534786,2	MCF-7	breast:
2	chr3:156530292..156533416-chr3:156536221..156538650,3	MCF-7	breast:
3	chr3:156473925..156475746-chr3:156530904..156533375,2	MCF-7	breast:
4	chr3:156270408..156273288-chr3:156530835..156533779,2	MCF-7	breast:
5	chr3:156531546..156534096-chr3:156793933..156795686,2	MCF-7	breast:
6	chr3:156400050..156402088-chr3:156531912..156534314,2	MCF-7	breast:
7	chr3:156388866..156397270-chr3:156524172..156537549,71	MCF-7	breast:
8	chr3:156497492..156500885-chr3:156532144..156534276,3	K562	blood:
9	chr3:156402796..156405445-chr3:156530779..156533531,2	MCF-7	breast:
10	chr3:156409514..156412147-chr3:156532498..156534140,2	K562	blood:
11	chr3:156532344..156534533-chr3:156884722..156886636,3	MCF-7	breast:
12	chr3:156517343..156519280-chr3:156530527..156533564,3	MCF-7	breast:
13	chr3:156256323..156258307-chr3:156531885..156534419,2	MCF-7	breast:
14	chr3:156389670..156395497-chr3:156530360..156537244,22	MCF-7	breast:

No data

Variant related genes	Relation type
PA2G4P4	TF binding region
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12493636	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4680292	1.00[ASN][1000 genomes]
rs4680293	1.00[ASN][1000 genomes]
rs4680308	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	nsv877686	chr3:156489509-156557697	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156527200-156533200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:156527400-156533800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:156527800-156533800	Enhancers	HMEC	breast
4	chr3:156528200-156533600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:156529200-156533600	Weak transcription	Primary B cells from cord blood	blood
6	chr3:156529400-156533400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:156529600-156533600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:156529800-156533600	Weak transcription	Fetal Heart	heart
9	chr3:156530600-156533400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:156530600-156533600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:156530600-156533800	Weak transcription	Lung	lung
12	chr3:156530800-156533800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:156530800-156533800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:156530800-156533800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:156530800-156533800	Weak transcription	Left Ventricle	heart
16	chr3:156531000-156533200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr3:156531000-156533400	Weak transcription	NHLF	lung
18	chr3:156531000-156533600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156531000-156533600	Weak transcription	HSMMtube	muscle
20	chr3:156531000-156533800	Weak transcription	Right Ventricle	heart
21	chr3:156531000-156533800	Weak transcription	Small Intestine	intestine
22	chr3:156531200-156533200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:156531200-156533400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr3:156531200-156533400	Weak transcription	HepG2	liver
25	chr3:156531200-156533400	Weak transcription	HUVEC	blood vessel
26	chr3:156531200-156533400	Weak transcription	NHDF-Ad	bronchial
27	chr3:156531200-156533600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:156531200-156533600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:156531200-156533600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr3:156531200-156533600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:156531200-156533600	Weak transcription	Osteobl	bone
32	chr3:156531200-156533800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:156531200-156533800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:156531200-156533800	Weak transcription	Esophagus	oesophagus
35	chr3:156531200-156533800	Weak transcription	Pancreas	Pancrea
36	chr3:156531200-156533800	Weak transcription	Psoas Muscle	Psoas
37	chr3:156531200-156533800	Weak transcription	Right Atrium	heart
38	chr3:156531200-156533800	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:156531200-156533800	Weak transcription	HSMM	muscle
40	chr3:156531200-156534000	Weak transcription	Aorta	Aorta
41	chr3:156531200-156534000	Weak transcription	Gastric	stomach
42	chr3:156531200-156534200	Weak transcription	Stomach Mucosa	stomach
43	chr3:156531400-156533200	Weak transcription	Liver	Liver
44	chr3:156531400-156533400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr3:156531400-156533400	Weak transcription	NH-A	brain
46	chr3:156531400-156533400	Enhancers	NHEK	skin
47	chr3:156531400-156533600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:156531400-156534000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:156531400-156534600	Weak transcription	K562	blood
50	chr3:156531600-156533200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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