Variant report

Variant	rs4680308
Chromosome Location	chr3:156560174-156560175
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11711737	0.85[AFR][1000 genomes]
rs11921839	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4234314	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156554400-156561000	Weak transcription	Aorta	Aorta
2	chr3:156555400-156560400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:156555400-156560400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156555400-156560400	Weak transcription	Osteobl	bone
5	chr3:156555400-156560800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:156555600-156560600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156555600-156560600	Weak transcription	NHDF-Ad	bronchial
8	chr3:156557200-156561000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:156559000-156560800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:156559200-156560600	Weak transcription	Ovary	ovary
11	chr3:156559400-156561600	Enhancers	Fetal Brain Male	brain
12	chr3:156560000-156560600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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