Variant report

Variant	rs11921839
Chromosome Location	chr3:156609875-156609876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10804776	1.00[CEU][hapmap]
rs10936044	1.00[CEU][hapmap]
rs10936047	0.87[CEU][hapmap]
rs10936051	0.87[CEU][hapmap]
rs10936052	0.88[CEU][hapmap]
rs10936053	0.88[CEU][hapmap]
rs11927587	1.00[CEU][hapmap]
rs11929637	1.00[CEU][hapmap]
rs12491332	1.00[CEU][hapmap]
rs12494440	1.00[CEU][hapmap]
rs12629618	1.00[CEU][hapmap]
rs12629809	1.00[CEU][hapmap]
rs1871967	1.00[CEU][hapmap]
rs2321458	1.00[CEU][hapmap]
rs4234314	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4680308	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4680327	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877685	chr3:156444383-156611676	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv829765	chr3:156568263-156718496	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156607400-156610000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:156607600-156610600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:156609600-156611600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:156609600-156612000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:156609800-156611400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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