Variant report

Variant	rs11711770
Chromosome Location	chr3:43066768-43066769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43059886..43061659-chr3:43065331..43067767,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11710681	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11711497	0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11711635	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718847	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs12492075	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12495968	0.80[MEX][hapmap]
rs1533697	0.89[CHD][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17075084	0.89[CHD][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs17469356	0.88[JPT][hapmap]
rs3732858	0.93[MEX][hapmap];0.86[TSI][hapmap]
rs55989335	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57079337	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57641345	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs601055	0.86[TSI][hapmap]
rs62247069	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62247120	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62247121	0.87[EUR][1000 genomes]
rs62249581	0.81[EUR][1000 genomes]
rs72869056	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43053600-43073200	Weak transcription	Right Atrium	heart
2	chr3:43059600-43074400	Weak transcription	Lung	lung
3	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
4	chr3:43060800-43069600	Weak transcription	Stomach Mucosa	stomach
5	chr3:43061000-43072200	Weak transcription	Liver	Liver
6	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:43061800-43073000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:43063000-43077400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:43063400-43072000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:43063600-43072600	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:43064000-43077800	Weak transcription	Brain Substantia Nigra	brain
13	chr3:43064600-43066800	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:43064800-43067400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:43065000-43067200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:43065200-43067000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:43065200-43067000	Enhancers	Fetal Intestine Small	intestine
18	chr3:43065200-43072400	Weak transcription	Placenta	Placenta
19	chr3:43065400-43067000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:43065800-43067000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr3:43065800-43067400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:43065800-43067800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:43065800-43067800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr3:43066000-43066800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr3:43066000-43067200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr3:43066000-43068000	Enhancers	Fetal Thymus	thymus
28	chr3:43066200-43067000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr3:43066200-43067800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:43066200-43068000	Enhancers	Thymus	Thymus
31	chr3:43066200-43068200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:43066200-43068200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr3:43066400-43067400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr3:43066400-43067600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:43066400-43067600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:43066400-43068200	Enhancers	Primary T cells from cord blood	blood
37	chr3:43066400-43068200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr3:43066400-43068200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr3:43066600-43067400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:43066600-43067600	Enhancers	Dnd41	blood
41	chr3:43066600-43067800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:43066600-43068000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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