Variant report

Variant	rs17075084
Chromosome Location	chr3:43073453-43073454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43062963..43065859-chr3:43071110..43073966,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11710681	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11711497	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11711635	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11711770	0.89[CHD][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs11718847	0.81[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs12492075	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12495968	0.87[MEX][hapmap]
rs1523123	0.86[EUR][1000 genomes]
rs1533697	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17469356	0.90[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732858	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs537396	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs540864	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs55989335	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57079337	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57641345	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57758537	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs601055	0.90[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs62247069	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62247120	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62247121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62247124	0.86[EUR][1000 genomes]
rs62247127	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62249581	0.89[EUR][1000 genomes]
rs686464	0.90[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72869056	0.89[EUR][1000 genomes]
rs834189	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43059600-43074400	Weak transcription	Lung	lung
2	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
3	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:43063000-43077400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:43064000-43077800	Weak transcription	Brain Substantia Nigra	brain
7	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:43067400-43076200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:43067600-43084000	Weak transcription	Aorta	Aorta
10	chr3:43067800-43074400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:43068200-43076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:43070600-43084800	Weak transcription	Esophagus	oesophagus
13	chr3:43071000-43073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:43071200-43073800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:43072200-43076600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr3:43072400-43073600	Enhancers	Adipose Nuclei	Adipose
17	chr3:43072600-43073600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:43072600-43073600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:43072600-43073800	Enhancers	Fetal Muscle Leg	muscle
20	chr3:43072600-43073800	Enhancers	Fetal Stomach	stomach
21	chr3:43072800-43073600	Enhancers	Ovary	ovary
22	chr3:43073000-43073600	Enhancers	Fetal Muscle Trunk	muscle
23	chr3:43073000-43073800	Weak transcription	Fetal Intestine Small	intestine
24	chr3:43073000-43074000	Weak transcription	Liver	Liver
25	chr3:43073200-43073600	Weak transcription	Gastric	stomach
26	chr3:43073200-43073800	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:43073200-43074000	Enhancers	Left Ventricle	heart
28	chr3:43073200-43074000	Enhancers	Right Atrium	heart
29	chr3:43073400-43074000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:43073400-43074000	Weak transcription	Placenta	Placenta
31	chr3:43073400-43077200	Weak transcription	Stomach Mucosa	stomach
32	chr3:43073400-43077600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:43073400-43077800	Weak transcription	Fetal Intestine Large	intestine
34	chr3:43073400-43084600	Weak transcription	Brain Angular Gyrus	brain
35	chr3:43073400-43084600	Weak transcription	Brain Inferior Temporal Lobe	brain

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