Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11710681	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11711497	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11711635	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11718847	0.82[EUR][1000 genomes]
rs12492075	0.82[ASN][1000 genomes]
rs1523123	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533697	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17075084	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17469356	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs537396	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs540864	0.94[EUR][1000 genomes]
rs55989335	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57079337	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57758537	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs601055	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62247069	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62247120	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62247121	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62247124	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs686464	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs834189	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43080200-43091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:43084200-43087600	Enhancers	Liver	Liver
3	chr3:43085000-43097600	Weak transcription	Ovary	ovary
4	chr3:43085200-43094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:43085600-43086600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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