Variant report

Variant	rs57758537
Chromosome Location	chr3:43078226-43078227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr3:43078067-43078267	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000232375	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11710681	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11711497	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11711635	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11718847	0.81[EUR][1000 genomes]
rs12492075	0.87[ASN][1000 genomes]
rs1523123	0.97[EUR][1000 genomes]
rs1533697	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17075084	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17469356	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732858	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs537396	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs540864	0.95[EUR][1000 genomes]
rs55989335	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57079337	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs601055	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62247069	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62247120	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62247121	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62247124	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62247127	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs686464	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs834189	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
2	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:43067600-43084000	Weak transcription	Aorta	Aorta
6	chr3:43070600-43084800	Weak transcription	Esophagus	oesophagus
7	chr3:43073400-43084600	Weak transcription	Brain Angular Gyrus	brain
8	chr3:43073400-43084600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:43073600-43084400	Weak transcription	Adipose Nuclei	Adipose
10	chr3:43074000-43078400	Strong transcription	Placenta	Placenta
11	chr3:43074600-43084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:43074800-43081200	Weak transcription	Fetal Intestine Small	intestine
13	chr3:43075200-43084200	Weak transcription	Ovary	ovary
14	chr3:43076200-43078800	Strong transcription	Fetal Stomach	stomach
15	chr3:43076200-43079000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:43076600-43078800	Enhancers	Primary T cells fromperipheralblood	blood
17	chr3:43076600-43079000	Enhancers	Fetal Muscle Leg	muscle
18	chr3:43076800-43078400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:43076800-43079000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr3:43077200-43084400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:43077400-43078400	Enhancers	Brain Hippocampus Middle	brain
22	chr3:43077600-43078400	Enhancers	Brain Cingulate Gyrus	brain
23	chr3:43077600-43084600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:43077800-43078600	Enhancers	Brain Substantia Nigra	brain
25	chr3:43077800-43080000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:43078000-43079200	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:43078200-43078800	Strong transcription	Liver	Liver

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