Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11710681	0.84[EUR][1000 genomes]
rs11711497	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs11711635	0.84[EUR][1000 genomes]
rs1523123	0.94[EUR][1000 genomes]
rs1533697	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs17075084	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs17469356	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3732858	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs537396	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55989335	0.84[EUR][1000 genomes]
rs57079337	0.85[EUR][1000 genomes]
rs57758537	0.95[EUR][1000 genomes]
rs601055	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62247069	0.84[EUR][1000 genomes]
rs62247120	0.84[EUR][1000 genomes]
rs62247121	0.84[EUR][1000 genomes]
rs62247124	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62247127	0.94[EUR][1000 genomes]
rs686464	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs834189	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
2	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:43067600-43084000	Weak transcription	Aorta	Aorta
5	chr3:43070600-43084800	Weak transcription	Esophagus	oesophagus
6	chr3:43073400-43084600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:43073400-43084600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:43073600-43084400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:43074600-43084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:43075200-43084200	Weak transcription	Ovary	ovary
11	chr3:43077200-43084400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:43077600-43084600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:43078400-43084200	Weak transcription	Placenta	Placenta
14	chr3:43078800-43084200	Weak transcription	Liver	Liver
15	chr3:43078800-43084400	Weak transcription	Fetal Stomach	stomach
16	chr3:43079000-43085400	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:43080200-43091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

Quick Search: