Variant report

Variant	rs11712488
Chromosome Location	chr3:21874705-21874706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11129026	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13091889	0.88[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs1352125	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1486371	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17009663	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17009681	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17009720	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17009729	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17009771	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3849553	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73042746	0.81[EUR][1000 genomes]
rs73044706	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73044707	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73044714	0.92[EUR][1000 genomes]
rs9868247	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21873200-21875800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr3:21873200-21876800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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