Variant report

Variant	rs11713994
Chromosome Location	chr3:133411882-133411883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1005933	0.89[ASN][1000 genomes]
rs11914965	0.84[ASN][1000 genomes]
rs13061966	0.83[ASN][1000 genomes]
rs3935228	0.84[ASN][1000 genomes]
rs4241355	0.86[ASN][1000 genomes]
rs4293701	0.86[ASN][1000 genomes]
rs4419374	0.84[ASN][1000 genomes]
rs4437139	0.86[ASN][1000 genomes]
rs4538371	0.87[ASN][1000 genomes]
rs4854592	0.80[ASN][1000 genomes]
rs4854593	0.80[ASN][1000 genomes]
rs4854745	0.84[ASN][1000 genomes]
rs4854746	0.84[ASN][1000 genomes]
rs6769437	0.86[ASN][1000 genomes]
rs72972224	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9283586	0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs9289451	0.83[ASN][1000 genomes]
rs9830153	0.84[ASN][1000 genomes]
rs9985395	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133410800-133412000	Weak transcription	HepG2	liver
2	chr3:133411800-133430800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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