Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1005933	0.96[ASN][1000 genomes]
rs11713994	0.86[ASN][1000 genomes]
rs11914965	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13061966	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13085923	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs16840612	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3935228	0.91[ASN][1000 genomes]
rs4241355	0.93[ASN][1000 genomes]
rs4293701	0.93[ASN][1000 genomes]
rs4419374	0.92[ASN][1000 genomes]
rs4420866	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4437139	0.93[ASN][1000 genomes]
rs4538371	0.94[ASN][1000 genomes]
rs4854592	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4854593	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4854742	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4854745	0.92[ASN][1000 genomes]
rs4854746	0.92[ASN][1000 genomes]
rs6769437	0.93[ASN][1000 genomes]
rs9283586	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9289451	0.92[ASN][1000 genomes]
rs9830153	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9985395	TOPBP1	cis	cerebellum	SCAN
rs9985395	TOPBP1	cis	parietal	SCAN
rs9985395	NEK11	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133411800-133430800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:133412000-133415000	Enhancers	HepG2	liver
3	chr3:133412200-133437600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:133413000-133413200	Active TSS	Gastric	stomach

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