Variant report

Variant	rs4420866
Chromosome Location	chr3:133421515-133421516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11914965	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13061966	0.91[EUR][1000 genomes]
rs13080154	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13085923	0.89[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16840612	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4241355	0.81[ASN][1000 genomes]
rs4293701	0.81[ASN][1000 genomes]
rs4437139	0.81[ASN][1000 genomes]
rs4854592	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4854593	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4854742	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6769437	0.81[ASN][1000 genomes]
rs9283586	0.87[CHB][hapmap]
rs9985395	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329410	chr3:133421456-133421640	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133411800-133430800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:133412200-133437600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:133413200-133423200	Weak transcription	Gastric	stomach
4	chr3:133415000-133422600	Weak transcription	HepG2	liver
5	chr3:133418800-133437600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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