Variant report

Variant	rs11715340
Chromosome Location	chr3:133434817-133434818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133431282..133433899-chr3:133433909..133436143,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10049093	0.87[ASN][1000 genomes]
rs10935081	0.89[ASN][1000 genomes]
rs10935083	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717407	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16840692	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16840699	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16840751	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16840812	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1799852	0.88[JPT][hapmap]
rs4241356	0.87[ASN][1000 genomes]
rs4428180	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4532136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4582061	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4854595	0.87[ASN][1000 genomes]
rs4854748	0.88[ASN][1000 genomes]
rs4854749	0.88[ASN][1000 genomes]
rs4854750	0.88[ASN][1000 genomes]
rs4854752	0.80[ASN][1000 genomes]
rs4854754	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4854755	0.87[ASN][1000 genomes]
rs4854757	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801244	0.87[ASN][1000 genomes]
rs8177181	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs8177184	0.87[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs8177185	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8177186	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8177203	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8177215	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs8177235	0.84[MEX][hapmap]
rs9847885	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv963279	chr3:133426521-133449029	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133412200-133437600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:133418800-133437600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:133431200-133435400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:133431200-133436000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:133431600-133436200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:133433200-133439400	Weak transcription	Ovary	ovary
7	chr3:133433800-133438000	Enhancers	HepG2	liver
8	chr3:133434200-133437000	Enhancers	Brain Substantia Nigra	brain
9	chr3:133434400-133435600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:133434800-133437000	Enhancers	Brain Angular Gyrus	brain
11	chr3:133434800-133437000	Enhancers	Brain Hippocampus Middle	brain

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