Variant report

Variant	rs8177185
Chromosome Location	chr3:133464618-133464619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:133464565-133465451	HepG2	liver:	n/a	chr3:133464712-133464731 chr3:133464721-133464730
2	HDAC2	chr3:133464580-133465490	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:133464533-133466088	HepG2	liver:	n/a	n/a
4	RCOR1	chr3:133464618-133465468	HepG2	liver:	n/a	n/a
5	RAD21	chr3:133464521-133465486	HepG2	liver:	n/a	chr3:133464712-133464731 chr3:133464721-133464730
6	MAFK	chr3:133464074-133464731	HepG2	liver:	n/a	n/a
7	SMC3	chr3:133464615-133465322	HepG2	liver:	n/a	chr3:133464900-133464907
8	MYBL2	chr3:133464363-133465626	HepG2	liver:	n/a	n/a
9	MYBL2	chr3:133464479-133466127	HepG2	liver:	n/a	n/a
10	POLR2A	chr3:133464423-133479250	HepG2	liver:	n/a	n/a
11	MAFK	chr3:133464099-133465339	HepG2	liver:	n/a	n/a
12	MXI1	chr3:133464497-133466063	HepG2	liver:	n/a	n/a
13	HEY1	chr3:133464270-133467811	HepG2	liver:	n/a	chr3:133465389-133465404
14	POLR2A	chr3:133464411-133467827	HepG2	liver:	n/a	n/a
15	YY1	chr3:133464576-133465519	HepG2	liver:	n/a	n/a
16	RAD21	chr3:133464419-133465474	HepG2	liver:	n/a	chr3:133464712-133464731 chr3:133464721-133464730
17	MBD4	chr3:133464603-133466405	HepG2	liver:	n/a	n/a
18	NR3C1	chr3:133464354-133464631	A549	lung:	n/a	chr3:133464493-133464507 chr3:133464443-133464469 chr3:133464487-133464513 chr3:133464487-133464513 chr3:133464487-133464513 chr3:133464424-133464440 chr3:133464487-133464513 chr3:133464446-133464455

Variant related genes	Relation type
TF	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10049093	0.91[ASN][1000 genomes]
rs10935081	0.89[ASN][1000 genomes]
rs10935083	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11715340	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11717407	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840692	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16840699	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840751	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16840812	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1799852	0.88[JPT][hapmap]
rs4241356	0.91[ASN][1000 genomes]
rs4428180	0.88[JPT][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.90[ASN][1000 genomes]
rs4532136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582061	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4854595	0.91[ASN][1000 genomes]
rs4854748	0.88[ASN][1000 genomes]
rs4854749	0.88[ASN][1000 genomes]
rs4854750	0.88[ASN][1000 genomes]
rs4854752	0.80[ASN][1000 genomes]
rs4854754	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4854755	0.91[ASN][1000 genomes]
rs4854757	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801244	0.91[ASN][1000 genomes]
rs8177181	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs8177184	0.92[CHD][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];0.91[ASN][1000 genomes]
rs8177186	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177203	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8177215	0.92[CHB][hapmap];0.88[JPT][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177235	0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs9847885	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133463400-133465200	Flanking Active TSS	Liver	Liver
2	chr3:133463600-133465200	Weak transcription	Spleen	Spleen
3	chr3:133464400-133464800	Bivalent Enhancer	Adipose Nuclei	Adipose
4	chr3:133464400-133464800	Flanking Active TSS	Brain Cingulate Gyrus	brain
5	chr3:133464400-133464800	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr3:133464400-133464800	Flanking Active TSS	Brain Substantia Nigra	brain
7	chr3:133464400-133465800	Enhancers	Pancreas	Pancrea
8	chr3:133464400-133466400	Weak transcription	K562	blood
9	chr3:133464600-133464800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr3:133464600-133464800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr3:133464600-133464800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:133464600-133464800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:133464600-133464800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:133464600-133464800	Flanking Active TSS	Brain Angular Gyrus	brain
15	chr3:133464600-133464800	Flanking Active TSS	Brain Anterior Caudate	brain
16	chr3:133464600-133464800	Flanking Active TSS	Fetal Brain Female	brain
17	chr3:133464600-133464800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr3:133464600-133464800	Bivalent/Poised TSS	Right Ventricle	heart
19	chr3:133464600-133464800	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr3:133464600-133465000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
21	chr3:133464600-133465000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr3:133464600-133465000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:133464600-133465000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
24	chr3:133464600-133465000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:133464600-133465000	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr3:133464600-133465200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
27	chr3:133464600-133465200	Bivalent Enhancer	Fetal Lung	lung
28	chr3:133464600-133465400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr3:133464600-133465600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:133464600-133465600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr3:133464600-133465800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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