Variant report

Variant	rs11715464
Chromosome Location	chr3:42909687-42909688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12494055	0.90[GIH][hapmap];0.92[JPT][hapmap]
rs13093968	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17455509	1.00[LWK][hapmap]
rs17469719	1.00[LWK][hapmap]
rs3732860	0.82[CHD][hapmap];0.90[GIH][hapmap];0.92[JPT][hapmap]
rs6788947	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334229	chr3:42908248-42912446	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11715464	HHATL	cis	parietal	SCAN
rs11715464	HHATL	cis	cerebellum	SCAN
rs11715464	TTC21A	cis	parietal	SCAN
rs11715464	LRRC2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42894800-42912800	Weak transcription	Right Atrium	heart
2	chr3:42897800-42913400	Weak transcription	Pancreas	Pancrea
3	chr3:42905600-42912800	Strong transcription	Placenta	Placenta
4	chr3:42907000-42915800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:42907800-42910200	Enhancers	Liver	Liver
6	chr3:42908000-42909800	Enhancers	HepG2	liver
7	chr3:42909000-42912400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:42909600-42912600	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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