Variant report

Variant	rs11715683
Chromosome Location	chr3:85372128-85372129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85364029..85366181-chr3:85371658..85373734,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11719276	0.90[EUR][1000 genomes]
rs12374196	0.94[ASN][1000 genomes]
rs12490643	0.94[CHB][hapmap];0.89[YRI][hapmap]
rs12632038	0.86[ASN][1000 genomes]
rs12637719	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[YRI][hapmap]
rs12638015	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs13062591	0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13078384	0.81[CEU][hapmap]
rs13085411	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs13087094	0.98[ASN][1000 genomes]
rs13089143	0.93[ASN][1000 genomes]
rs13097955	0.90[ASN][1000 genomes]
rs1470797	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1551213	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs17022526	0.94[CHB][hapmap];0.89[YRI][hapmap]
rs4635720	0.94[ASN][1000 genomes]
rs4856562	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7622240	0.95[CHB][hapmap];0.88[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9309973	0.86[CHB][hapmap];0.83[TSI][hapmap]
rs9811546	1.00[LWK][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes]
rs9817509	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs9831374	0.90[EUR][1000 genomes]
rs9845394	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs9848082	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9852851	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs9872078	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv460747	chr3:85163167-85391672	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv590899	chr3:85163167-85391672	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1012601	chr3:85246185-85426996	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536618	chr3:85246185-85426996	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948806	chr3:85304744-85463443	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1013407	chr3:85307022-85460325	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv870153	chr3:85326695-85426936	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85368400-85373800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:85369000-85377000	Weak transcription	Brain Anterior Caudate	brain

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